# ppsr: An R implementation of the Predictive Power Score

*This article was first published on*

Want to share your content on python-bloggers? click here.

**python – paulvanderlaken.com**, and kindly contributed to python-bloggers. (You can report issue about the content on this page here)Want to share your content on python-bloggers? click here.

A few months ago, I wrote about the **Predictive Power Score (PPS)**: a handy metric to quickly explore and quantify the relationships in a dataset.

As a social scientist, I was taught to use a correlation matrix to describe the relationships in a dataset. Yet, in my opinion, the PPS provides three handy advantages:

**PPS works for any type of data, also nominal/categorical variables****PPS quantifies non-linear relationships between variables****PPS acknowledges the asymmetry of those relationships**

Florian Wetschoreck came up with the PPS idea, wrote the original blog, and programmed a Python implementation of it (called `ppscore`).

Yet, I work mostly in R and I was very keen on incorporating this powertool into my general data science workflow.

So, over the holiday period, I did something I have never done before: **I wrote an R package!**

It’s called `ppsr` and you can find the code here on github.

## Installation

# You can get the development version from GitHub: # install.packages('devtools') devtools::install_github('https://github.com/paulvanderlaken/ppsr')

## Usage

The `ppsr`

package has three main functions that compute PPS:

`score()`

– which computes an x-y PPS`score_predictors()`

– which computes X-y PPS`score_matrix()`

– which computes X-Y PPS

## Visualizing PPS

Subsequently, there are two main functions that wrap around these computational functions to help you visualize your PPS using `ggplot2`

:

`visualize_predictors()`

– producing a barplot of all X-y PPS

`visualize_matrix()`

– producing a heatmap of all X-Y PPS

Note that `Species` is a nominal/categorical variable, with three character/text options.

A correlation matrix would not be able to show us that the type of iris `Species` can be predicted extremely well by the petal length and width, and somewhat by the sepal length and width. Yet, particularly sepal width is not easily predicted by the type of species.

## Exploring mtcars

It takes about 10 seconds to run 121 decision trees with `visualize_matrix(mtcars)`. Yet, the output is much more informative than the correlation matrix:

`cyl`can be much better predicted by`mpg`than the other way around- the classification of
`vs`can be done well using nearly all variables as predictors, except for`am` - yet, it’s hard to predict anything based on the
`vs`classification - a cars’
`am`can’t be predicted at all using these variables

The correlation matrix does provides insights that are not provided by the PPS matrix. Most importantly, the sign and strength of any linear relationship that may exist. For instance, we can deduce that `mpg `relates strongly negatively with `cyl`.

Yet, even though half of the matrix does not provide any additional information (due to the symmetry), I still find it hard to derive the most important relations and insights at a first glance.

Moreover, the rows and columns for `vs` and `am` are not very informative in this correlation matrix as it contains pearson correlations coefficients by default, whereas `vs` and `am` are binary variables. The same can be said for `cyl`, `gear` and `carb`, which contain ordinal categories / integer data, so you can discuss the value of these coefficients depicted here.

## Exploring trees

In R, there are many datasets built in via the `datasets` package. Let’s explore some using the `ppsr::visualize_matrix()` function.

`datasets::trees` has data on 31 trees’ girth, height and volume.

`visualize_matrix(datasets::trees)` shows that both girth and volume can be used to predict the other quite well, but not perfectly.

Let’s have a look at the correlation matrix.

The scores here seem quite higher in general. A near perfect correlation between volume and girth.

Is it near perfect though? Let’s have a look at the underlying data and fit a linear model to it.

You will still be pretty far off the real values when you use a linear model based on Girth to predict Volume. This is what the original PPS of 0.65 tried to convey.

Actually, I’ve run the math for this linaer model and the RMSE is still 4.11. Using just the mean Volume as a prediction of Volume will result in 16.17 RMSE. If we map these RMSE values on a linear scale from 0 to 1, we would get the PPS of our linear model, which is about 0.75.

So, actually, the linear model is a better predictor than the decision tree that is used as a default in the `ppsr `package. That was used to generate the PPS matrix above.

Yet, the linear model definitely does not provide a perfect prediction, even though the correlation may be near perfect.

## Conclusion

In sum, I feel using the general idea behind PPS can be very useful for data exploration.

Particularly in more data science / machine learning type of projects. The PPS can provide a quick survey of which targets can be predicted using which features, potentially with more complex than just linear patterns.

Yet, the old-school correlation matrix also still provides unique and valuable insights that the PPS matrix does not. So I do not consider the PPS so much an ~~alternative~~, as much as a **complement **in the toolkit of the data scientist & researcher.

**Enjoy the R package**, or the Python module for that matter, and let me know if you see any improvements!

**leave a comment**for the author, please follow the link and comment on their blog:

**python – paulvanderlaken.com**.

Want to share your content on python-bloggers? click here.